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ii sequence analysis software  (DNASTAR)


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    DNASTAR ii sequence analysis software
    Ii Sequence Analysis Software, supplied by DNASTAR, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/ii+sequence+analysis+software/ii+sequence+analysis+software/10__1186_slash_s43014___023___00193___6-72-20-25
    Average 90 stars, based on 1 article reviews
    ii sequence analysis software - by Bioz Stars, 2026-10
    90/100 stars

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    Related Articles

    Sequencing:

    Article Title: Metabolomic fingerprinting and genetic discrimination of four Hypericum taxa from Greece.
    Article Snippet: Hypericum perforatum has plenty of uses in traditional medicine and is the source of top-selling herbal drugs and food supplements.. The secondary metabolite chemistry for most of the nearly 500 Hypericum taxa is still unknown, even though they are used interchangeably.. In the present study, we characterized four Hypericum populations from Achaia, Greece, belonging to H. perforatum ssp. veronense, H. perfoliatum, H. triquetrifolium, and an uninvestigated taxon, H. empetrifolium ssp. empetrifolium, in terms of their essential oils and polar bioactives in methanolic extracts via GC-MS, LC-HRMS, LC-DAD-MS, and HPLC-DAD.

    Article Title: HPV prevalence and genetic predisposition to cervical cancer in Saudi Arabia
    Article Snippet: The amplified fragment was directly sequenced using the DYEnamic ET Dye Terminator Cycle Sequencing Kit (Amersham Biosciences) and were run on the MegaBase 1000 sequencer (Applied Biosystems). .. Sequencing results were aligned to the corresponding reference sequence and the SNPs were genotyped using SeqManII sequence analysis software (DNASTAR Inc.). .. We used the Linear Array HPV Genotyping Test ( LA HPV GT; Roche Diagnostics).

    Article Title: SNPs in genes implicated in radiation response are associated with radiotoxicity and evoke roles as predictive and prognostic biomarkers
    Article Snippet: .. Relevant segments of DNA were amplified by thermal cycling, sequenced using the DYEnamic ET Dye Terminator Cycle Sequencing Kit (Amersham Biosciences) and genotyped using SeqManII sequence analysis software (DNASTAR Inc.). ..

    Article Title: The complete genome of lytic Salmonella phage vB_SenM-PA13076 and therapeutic potency in the treatment of lethal Salmonella Enteritidis infections in mice.
    Article Snippet: Unincorporated dye terminators were removed from sequencing reactions with a SEQueaky Kleen H2O Dye Terminator Removal Kit (Bio-Rad Laboratories, Hercules, USA) before analysis. .. The raw sequences were stripped of poor quality data, and assembled into contigs using SeqMan II sequence analysis software (DNASTAR Inc., USA). .. Gaps were closed by custom primer walking on phage DNA or by PCR amplification (Sigma Genosys, the Woodlands, USA).

    Article Title: Staphylococcus microti Strains Isolated from an Italian Mediterranean Buffalo Herd.
    Article Snippet: Each PCR product was sequenced with all of the primers listed in Table 1 using the Brilliant Dye Terminator kit v3.1 (Nimagen, The Netherlands) and run on the 3700 xl DNA analyzer (Thermo Scientific, Waltham, MA, USA). .. The obtained sequences were assembled with SeqMan II sequence analysis software (DNASTAR Inc., Madison, WI, USA) independently for each of the 1511 bp amplicons. ..

    Article Title: Genomic and biological characterization of a new member of the genus Phikmvvirus infecting phytopathogenic Ralstonia bacteria.
    Article Snippet: The Ralstonia phage phiAP1 genome was sequenced using a 454 GS-FLX Titanium sequencing platform (Macrogen, Seul, South Korea). .. The reads were trimmed, quality filtered and assembled into contigs by de novo assembly using three 1 3 independent methods: DNAstar SeqMan II sequence analysis software, CLC Genomics Workbench v. 6.5.1 (CLC bio, USA) and Geneious R8.1 (Biomatters Ltd., Auckland, New Zealand), followed by mapping analysis adopting stringent parameters in which 90% of each read had to cover the other read with 90% identity. ..

    Article Title: Characterization and genomic analysis of a novel E. coli lytic phage with extended lytic activity against S. Enteridis and S. Typhimurium
    Article Snippet: .. The whole genome sequencing was entrusted to Wuhan Bena Technology Service Co, Ltd., and the sequencing data were assembled using SeqMan II sequence analysis software (DNASTAR Inc., USA). ..

    Software:

    Article Title: Metabolomic fingerprinting and genetic discrimination of four Hypericum taxa from Greece.
    Article Snippet: Hypericum perforatum has plenty of uses in traditional medicine and is the source of top-selling herbal drugs and food supplements.. The secondary metabolite chemistry for most of the nearly 500 Hypericum taxa is still unknown, even though they are used interchangeably.. In the present study, we characterized four Hypericum populations from Achaia, Greece, belonging to H. perforatum ssp. veronense, H. perfoliatum, H. triquetrifolium, and an uninvestigated taxon, H. empetrifolium ssp. empetrifolium, in terms of their essential oils and polar bioactives in methanolic extracts via GC-MS, LC-HRMS, LC-DAD-MS, and HPLC-DAD.

    Article Title: HPV prevalence and genetic predisposition to cervical cancer in Saudi Arabia
    Article Snippet: The amplified fragment was directly sequenced using the DYEnamic ET Dye Terminator Cycle Sequencing Kit (Amersham Biosciences) and were run on the MegaBase 1000 sequencer (Applied Biosystems). .. Sequencing results were aligned to the corresponding reference sequence and the SNPs were genotyped using SeqManII sequence analysis software (DNASTAR Inc.). .. We used the Linear Array HPV Genotyping Test ( LA HPV GT; Roche Diagnostics).

    Article Title: SNPs in genes implicated in radiation response are associated with radiotoxicity and evoke roles as predictive and prognostic biomarkers
    Article Snippet: .. Relevant segments of DNA were amplified by thermal cycling, sequenced using the DYEnamic ET Dye Terminator Cycle Sequencing Kit (Amersham Biosciences) and genotyped using SeqManII sequence analysis software (DNASTAR Inc.). ..

    Article Title: The complete genome of lytic Salmonella phage vB_SenM-PA13076 and therapeutic potency in the treatment of lethal Salmonella Enteritidis infections in mice.
    Article Snippet: Unincorporated dye terminators were removed from sequencing reactions with a SEQueaky Kleen H2O Dye Terminator Removal Kit (Bio-Rad Laboratories, Hercules, USA) before analysis. .. The raw sequences were stripped of poor quality data, and assembled into contigs using SeqMan II sequence analysis software (DNASTAR Inc., USA). .. Gaps were closed by custom primer walking on phage DNA or by PCR amplification (Sigma Genosys, the Woodlands, USA).

    Article Title: Staphylococcus microti Strains Isolated from an Italian Mediterranean Buffalo Herd.
    Article Snippet: Each PCR product was sequenced with all of the primers listed in Table 1 using the Brilliant Dye Terminator kit v3.1 (Nimagen, The Netherlands) and run on the 3700 xl DNA analyzer (Thermo Scientific, Waltham, MA, USA). .. The obtained sequences were assembled with SeqMan II sequence analysis software (DNASTAR Inc., Madison, WI, USA) independently for each of the 1511 bp amplicons. ..

    Article Title: Genomic and biological characterization of a new member of the genus Phikmvvirus infecting phytopathogenic Ralstonia bacteria.
    Article Snippet: The Ralstonia phage phiAP1 genome was sequenced using a 454 GS-FLX Titanium sequencing platform (Macrogen, Seul, South Korea). .. The reads were trimmed, quality filtered and assembled into contigs by de novo assembly using three 1 3 independent methods: DNAstar SeqMan II sequence analysis software, CLC Genomics Workbench v. 6.5.1 (CLC bio, USA) and Geneious R8.1 (Biomatters Ltd., Auckland, New Zealand), followed by mapping analysis adopting stringent parameters in which 90% of each read had to cover the other read with 90% identity. ..

    Article Title: Characterization and genomic analysis of a novel E. coli lytic phage with extended lytic activity against S. Enteridis and S. Typhimurium
    Article Snippet: .. The whole genome sequencing was entrusted to Wuhan Bena Technology Service Co, Ltd., and the sequencing data were assembled using SeqMan II sequence analysis software (DNASTAR Inc., USA). ..

    other:

    Article Title: Morphologic and genomic characterization of a broad host range Salmonella enterica serovar Pullorum lytic phage vB_SPuM_SP116.
    Article Snippet: This is a PDF file of an article that has undergone enhancements after acceptance, such as the addition of a cover page and metadata, and formatting for readability, but it is not yet the definitive version of record.. This version will undergo additional copyediting, typesetting and review before it is published in its final form, but we are providing this version to give early visibility of the article.. Please note that, during the production process, errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain.

    Amplification:

    Article Title: SNPs in genes implicated in radiation response are associated with radiotoxicity and evoke roles as predictive and prognostic biomarkers
    Article Snippet: .. Relevant segments of DNA were amplified by thermal cycling, sequenced using the DYEnamic ET Dye Terminator Cycle Sequencing Kit (Amersham Biosciences) and genotyped using SeqManII sequence analysis software (DNASTAR Inc.). ..



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